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  • Course Information
    • Course Title Code Semester Laboratory+Practice (Hour) Pool Type ECTS
    Molecular Methods in Forest Pathology OR1505 FALL-SPRING 3+1 E 6
    Learning Outcomes
    1-Understands contemporary and current techniques in forest pathology research.
    2-implements current molecular approaches in the field of forest pathology in research and practice.
    3-diagnosis known forest pathogens by molecular methods.
  • ECTS / WORKLOAD
    • ActivityPercentage

    (100)

    		NumberTime (Hours)Total Workload (hours)
    Course Duration (Weeks x Course Hours)14456
    Classroom study (Pre-study, practice)14228
    Assignments3022040
    Short-Term Exams (exam + preparation) 0000
    Midterm exams (exam + preparation)0000
    Project3013030
    Laboratory 0000
    Final exam (exam + preparation) 4011515
    0000
    Total Workload (hours)   169
    Total Workload (hours) / 30 (s)     5,63 ---- (6)
    ECTS Credit   6
  • Course Content
    • Week Topics Study Metarials
    1 introduction R1, introduction
    2 DNA EXTRACTION PROTOCOLS R1, P1, R2 Part II
    3 DNA SEQUENCE ANALYSIS R1, P2
    4 MOLECULAR METHODS TO DETECT PLANT PATHOGENS-1 R1, P3, R2 part III, pages 111-118
    5 MOLECULAR METHODS TO DETECT FOREST PATHOGENS-1 R1, P3, R2 part III pages 155-166
    6 MOLECULAR METHODS TO DETECT FOREST PATHOGENS-2 R1, P3, R2 part III pages 167-200
    7 HIGH-THROUGHPUT SEQUENCING R1, P4, R2 part VI pages 309-368
    8 HIGH-THROUGHPUT SEQUENCING SR1, SR2
    9 POPULATION GENOMICS IN PLANT PATHOLOGY R1, P5, R2 part VI Pages 405-422
    10 POPULATION GENOMICS IN FOREST PATHOLOGY R1, P5, SR3
    11 Synthesis, molecular genetic approaches toward understanding forest pathogens R1 P6, SR4
    12 Genomic biosurveillance of forest pests and pathogens SR5
    13 Innovative molecular detection, identification and monitoring methods in forest pathology SR6
    14 Project presentations and discussions R1, P7
    Prerequisites -
    Language of Instruction Turkish
    Responsible Assist. Prof. Dr. Funda OSKAY
    Instructors

    1-)Doktor Öğretim Üyesi Funda Oskay
    Assistants -
    Resources R1 Oskay, F., (2022). Orman Patolojisinde Moleküler Yöntemler Ders notu. R2. Luchi, N. (Ed.). (2022). Plant Pathology: Method and Protocols (Vol. 2536). Springer Nature
    Supplementary Book SR1. Tedersoo, L., Drenkhan, R., Anslan, S., Morales?Rodriguez, C., & Cleary, M. (2019). High?throughput identification and diagnostics of pathogens and pests: overview and practical recommendations. Molecular ecology resources, 19(1), 47-76. SR2. Aragona, M., Haegi, A., Valente, M. T., Riccioni, L., Orzali, L., Vitale, S., ... & Infantino, A. (2022). New-Generation Sequencing Technology in Diagnosis of Fungal Plant Pathogens: A Dream Comes True?. Journal of Fungi, 8(7), 737. SR3, Oskay, F., Tunalı, Z., Lehtijärvi, A. T., Doğmuş?Lehtijärvi, H. T., Woodward, S., & Mullett, M. (2020). Distribution and genetic diversity of Dothistroma septosporum in Pinus brutia forests of south?western Turkey. Plant Pathology, 69(8), 1551-1564. SR4. Stewart, J. E., Kim, M. S., & Klopfenstein, N. B. (2018). Molecular genetic approaches toward understanding forest-associated fungi and their interactive roles within forest ecosystems. Current forestry reports, 4(2), 72-84. SR5, Hamelin, R. C., & Roe, A. D. (2020). Genomic biosurveillance of forest invasive alien enemies: A story written in code. Evolutionary Applications, 13(1), 95-115. SR6. Luchi, N., Ioos, R., & Santini, A. (2020). Fast and reliable molecular methods to detect fungal pathogens in woody plants. Applied microbiology and biotechnology, 104(6), 2453-2468.
    Goals to teach the current molecular methods used in the detection, diagnosis, quantification, genetic diversity, taxonomies, evolutionary relationships, geographic spread and origins of pathogens causing disease in forest trees
    Content current molecular methods used in the detection, diagnosis, quantification, genetic diversity, taxonomies, evolutionary relationships, geographic spread and origins of pathogens causing disease in forest trees
  • Program Learning Outcomes
    • Program Learning Outcomes Level of Contribution
    1 Must learn the methods of both improving the basic sciences and engineering knowledge and obtaining new knowledges at a level of expertise 4
    2 Must be able to design, develop, and apply methods and experiments at advanced level to solve forestry problems, and analyses and interpret their results 3
    3 Must be able to provide solutions for the country?s forestry and environmental problems by considering global, public and ecosystem conditions 3
    4 Must be able to setup interdisciplinary approach to reach an advanced solution for forestry problems 4
    5 Must be able to act in an advanced level of professional ethics and responsibility during the identification and resolution of problems encountered in forestry -
    6 Must be able to do the task in a single or multi-disciplinary working groups, and be able to show effective communication -
    7 Must have the ability to effective use of both information technologies and a foreign language at an advanced level -
    8 Must be able to describe, foresee and solve the current problems in the fields of forestry and other related problems at advanced level brought by current global developments 3
    9 Must be able to use the tools and techniques required for forestry applications at an advanced level 4
    10 Must be able to think, interpret, analyse and synthesize forestry practices at an advanced level by using a three dimensional perspective -
    11 Must be able to research and survey any kinds of natural resources and event, and write advanced reliable reports by using the achieved findings 3
    12 Must be able to understand the necessity of life-long learning at an advanced level, and to be able to use the methods that keeps obtained knowledge up date 3
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